simplicity package
==================

Subpackages
-----------

.. toctree::
   :maxdepth: 4

   simplicity.evolution
   simplicity.phenotype
   simplicity.runners
   simplicity.tree
   simplicity.tuning

Submodules
----------

simplicity.dir\_manager module
------------------------------

.. automodule:: simplicity.dir_manager
   :members:
   :show-inheritance:
   :undoc-members:

simplicity.extrande module
--------------------------

.. automodule:: simplicity.extrande
   :members:
   :show-inheritance:
   :undoc-members:

simplicity.intra\_host\_model module
------------------------------------

.. automodule:: simplicity.intra_host_model
   :members:
   :show-inheritance:
   :undoc-members:

simplicity.output\_manager module
---------------------------------

.. automodule:: simplicity.output_manager
   :members:
   :show-inheritance:
   :undoc-members:

simplicity.plots\_manager module
--------------------------------

.. automodule:: simplicity.plots_manager
   :members:
   :show-inheritance:
   :undoc-members:

simplicity.population module
----------------------------

.. automodule:: simplicity.population
   :members:
   :show-inheritance:
   :undoc-members:

simplicity.population\_model module
-----------------------------------

.. automodule:: simplicity.population_model
   :members:
   :show-inheritance:
   :undoc-members:

simplicity.random\_gen module
-----------------------------

.. automodule:: simplicity.random_gen
   :members:
   :show-inheritance:
   :undoc-members:

simplicity.runme module
-----------------------

.. automodule:: simplicity.runme
   :members:
   :show-inheritance:
   :undoc-members:

simplicity.settings\_manager module
-----------------------------------

.. automodule:: simplicity.settings_manager
   :members:
   :show-inheritance:
   :undoc-members:

simplicity.simulation module
----------------------------

.. automodule:: simplicity.simulation
   :members:
   :show-inheritance:
   :undoc-members:

Module contents
---------------

.. automodule:: simplicity
   :members:
   :show-inheritance:
   :undoc-members: